Bayesian approaches for the analysis of population genetic structure: an example from Platanthera leucophae (Orchidaceae)
We describe four extensions to existing Bayesian methods for the analysis of genetic structure in populations: (i) use of beta distributions to approximate the posterior distribution of f and θB; (ii) use of an entropy statistic to describe the amount of information about a parameter derived from the data; (iii) use of the Deviance Information Criterion (DIC) as a model choice criterion for determining whether there is evidence for inbreeding within populations or genetic differentiation among populations; and (iv) use of samples from the posterior distributions for f and θB derived from different data sets to determine whether the estimates are consistent with one another. We illustrate each of these extensions by applying them to data derived from previous alloyzme and random amplified polymorphic DNA surveys of an endangered orchid, Platanthera leucophaea, and we conclude that differences in θB from the two data sets may represent differences in the underlying mutational processes.
Holsinger, Kent E. and Wallace, Lisa E., "Bayesian approaches for the analysis of population genetic structure: an example from Platanthera leucophae (Orchidaceae)" (2004). EEB Articles. 5.
Reprinted from Molecular Ecology, Vol. 13, Issue 4, April 2004, pp. 887-894 The definitive version is available at: http://www.blackwell-synergy.com/links/doi/10.1111/j.1365-294X.2004.02052.x/abs/